categoryCompare - Meta-analysis of high-throughput experiments using feature annotations
Calculates significant annotations (categories) in each of two (or more) feature (i.e. gene) lists, determines the overlap between the annotations, and returns graphical and tabular data about the significant annotations and which combinations of feature lists the annotations were found to be significant. Interactive exploration is facilitated through the use of RCytoscape (heavily suggested).
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annotationgomultiplecomparisonpathwaysgeneexpressionbioconductor
6.68 score 6 stars 5 scripts 692 downloadsknitrProgressBar - Provides Progress Bars in 'knitr'
Provides a progress bar similar to 'dplyr' that can write progress out to a variety of locations, including stdout(), stderr(), or from file(). Useful when using 'knitr' or 'rmarkdown', and you still want to see progress of calculations in the terminal.
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6.39 score 12 stars 2 dependents 34 scripts 332 downloadsvisualizationQualityControl - Development of visualization methods for quality control
Provides utilities useful quality control of high-throughput -omics datasets.
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bioinformaticscorrelationquality-controlvisualization
5.38 score 11 stars 36 scriptsICIKendallTau - Calculates information-content-informed Kendall-tau
Provides functions for calculating information-content-informed Kendall-tau. This version of Kendall-tau allows for the inclusion of missing values.
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correlationmissingnesscpp
4.49 score 6 stars 17 scriptscategoryCompare2 - Meta-Analysis of High-Throughput Experiments Using Feature Annotations
Facilitates comparison of significant annotations (categories) generated on one or more feature lists. Interactive exploration is facilitated through the use of RCytoscape (heavily suggested).
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annotationgomultiplecomparisonpathwaysgeneexpressionbioconductorbioinformaticsgene-annotationgene-expressiongene-sets
4.42 score 2 stars 11 scriptsScanCentricPeakCharacterization - Functionality for Characterizing Peaks in Mass Spectrometry in a Scan-Centric Manner
Provides a functions and classes for detecting, characterizing, and integrating peaks in a scan-centric manner from direct-injection mass spectrometry data.
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3.00 score 1 scripts