categoryCompare - Meta-analysis of high-throughput experiments using feature annotations

Calculates significant annotations (categories) in each of two (or more) feature (i.e. gene) lists, determines the overlap between the annotations, and returns graphical and tabular data about the significant annotations and which combinations of feature lists the annotations were found to be significant. Interactive exploration is facilitated through the use of RCytoscape (heavily suggested).

Last updated 4 months ago

annotationgomultiplecomparisonpathwaysgeneexpression

6 stars 2.97 score 83 dependencies

knitrProgressBar - Provides Progress Bars in 'knitr'

Provides a progress bar similar to 'dplyr' that can write progress out to a variety of locations, including stdout(), stderr(), or from file(). Useful when using 'knitr' or 'rmarkdown', and you still want to see progress of calculations in the terminal.

Last updated 2 months ago

12 stars 1.98 score 3 dependencies 2 dependents

ICIKendallTau - Calculates information-content-informed Kendall-tau

Provides functions for calculating information-content-informed Kendall-tau. This version of Kendall-tau allows for the inclusion of missing values.

Last updated 2 months ago

correlationmissingness

6 stars 1.45 score 10 dependencies

visualizationQualityControl - Development of visualization methods for quality control

Provides utilities useful quality control of high-throughput -omics datasets.

Last updated 7 months ago

bioinformaticscorrelationquality-controlvisualization

9 stars 1.24 score 62 dependencies

categoryCompare2 - Meta-Analysis of High-Throughput Experiments Using Feature Annotations

Facilitates comparison of significant annotations (categories) generated on one or more feature lists. Interactive exploration is facilitated through the use of RCytoscape (heavily suggested).

Last updated 1 months ago

bioconductorbioinformaticsgene-annotationgene-expressiongene-sets

1 stars 0.82 score 55 dependencies

ScanCentricPeakCharacterization - Functionality for Characterizing Peaks in Mass Spectrometry in a Scan-Centric Manner

Provides a functions and classes for detecting, characterizing, and integrating peaks in a scan-centric manner from direct-injection mass spectrometry data.

Last updated 5 months ago

0.36 score 144 dependencies